Tax audit
Business Tax Audit: How It Works and How to Prepare
Published · 9 min read · NS Accounting & Tax Office
Written by the NSTAX team of accountants and tax advisers

The word ‘audit’ causes anxiety for every business owner, yet the greatest problem is often not the audit itself but a lack of preparation. During this period, AADE is intensifying its cross-checks as the end of 2026 approaches, when tax cases concerning the 2020 tax year become time-barred. In this article, NSTAX explains how a tax audit unfolds, what rights you have and how you can prepare in good time.
For more complete preparation, read our guide to myDATA and electronic invoicing, tax authority and EFKA debt settlement, tax return deadlines and explore NSTAX services for businesses.
Why Audits Are Increasing at This Time
The tax administration may issue a tax assessment within five years from the end of the year in which the filing deadline expired. For cases concerning the 2020 tax year, this means AADE must have notified the relevant acts by 31 December 2026, which is why these cases are being prioritised. In certain circumstances, such as tax evasion or the presentation of new evidence, a longer limitation period applies.
How a Business Is Selected for Audit
Selection is largely based on electronic data cross-checks. AADE compares the information declared by the business with information from multiple sources:
- Documents transmitted to myDATA
- Income tax, VAT and E9 declarations
- Bank account and payment institution data
- Data from digital platforms, such as short-term rental platforms
- Discrepancies between declared income and wealth or bank-account activity
The Stages of a Tax Audit
A tax audit does not end with a single decision; it passes through successive stages, each with its own deadline:
- Audit order and notification to the business
- Request for records and accounting books
- Provisional tax assessment based on the initial findings
- Objection period, during which the business may submit its views and evidence
- Final tax assessment act
- Right to an administrative appeal before the Dispute Resolution Directorate against the final act
Time is crucial: every right must be exercised within the corresponding time limit, otherwise it is lost.
A Practical Example
Suppose a trading business has transmitted annual revenue through myDATA that is €8,000 higher than the revenue declared in its income tax return. The difference may be caused by a simple accounting discrepancy, such as credit invoices that were not recorded correctly, but an unprepared business risks having the difference treated as undeclared income, with tax and additional charges.
By contrast, a business that keeps an organised archive and documents the credit invoices during the objection period can show that the difference is accounting-related rather than taxable, avoiding the additional tax. The amount is illustrative, but the same reasoning applies to many real cases.
6 Preparation Steps Before an Audit
- Check that the data transmitted to myDATA agrees with your income tax and VAT returns.
- Organise supporting documents by year so they can be produced immediately.
- Document every credit invoice, discount or correction with the corresponding record.
- Check that all required returns, including VAT, income tax and E9, were filed on time.
- Record and explain any significant bank transactions that are not immediately evident from your books.
- Appoint a person or accounting firm in advance as the contact point for any communication with AADE.
What to Do If You Receive an Audit Order
- Do not ignore or delay any notification because the deadlines are binding.
- Contact your accountant immediately before providing any information.
- Request access to the audit file and review it carefully.
- Submit objections within the prescribed deadline, with evidence for every point you dispute.
- If a final act is issued, consider an administrative appeal without delay.
Frequently Asked Questions
How many years back can a business be audited?
How does AADE decide whom to audit?
What is a provisional tax assessment?
Can I challenge the result of an audit?
What is the most common mistake during an audit?
Would You Like Us to Review Your Business Before an Audit?
NSTAX, an accounting and tax advisory firm in Athens, proactively reviews your business books and transmissions and supports you at every stage of a tax audit. Contact us to prepare in good time.
Tax-audit deadlines and procedures may vary by case and may change under subsequent legislation. Contact us for an accurate assessment of your case. This article does not constitute legal advice.